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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6947259_6947588_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6947259 - 6947588
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GTAAACTGATGT
Flanking Amino Acid:
TPHEELERLAGLEQAILSPG
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
83.4
0.75
0.9
80.8
36.8
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
41
-0.6
2
56.81
44.6

Associated Gene:

Gene:
EIF4ENIF1
Ensembl Gene ID:
ENSAPLG00000004503
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004665
6937824 - 6957506
19683