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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6947769_6949829_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6947769 - 6949829
Intron Length:
2061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
CTGTATTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
TCTTCTGTATTT
Flanking Amino Acid:
SANKEKLRESTHSGVVLSVE
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
78.6
0.64
0.9
76.5
37.3
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
50.2
0.08
2.2
74.81
43.2

Associated Gene:

Gene:
EIF4ENIF1
Ensembl Gene ID:
ENSAPLG00000004503
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004665
6937824 - 6957506
19683