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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6953110_6953427_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6953110 - 6953427
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTTTCAATA
Flanking Amino Acid:
RKPMSPVAAQMSPLEIQQAA
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.1
82.7
30.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
81.2
0.7
0.8
77.7
30.3
Minor 5ss
40.2
-1.1
3.1
57
47.2
Minor BPS
61.8
0.37
1.5
70.41
36.7

Associated Gene:

Gene:
EIF4ENIF1
Ensembl Gene ID:
ENSAPLG00000004503
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004665
6937824 - 6957506
19683