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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6953568_6953736_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6953568 - 6953736
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
CTCTCTTTAACA
Flanking Amino Acid:
MDKSRDGYRNRQQRVTKSPA
Intron Amino Acid Position:
642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.4
20.6
Major BPS
73
0.57
1
73.6
28.6
Major PPT
79.8
0.67
0.8
76.2
31
Minor 5ss
34.8
-1.7
2.8
44.9
43.2
Minor BPS
78.2
0.88
1.2
78.6
38.6

Associated Gene:

Gene:
EIF4ENIF1
Ensembl Gene ID:
ENSAPLG00000004503
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004665
6937824 - 6957506
19683