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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6960551_6961019_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6960551 - 6961019
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATCC
Flanking Amino Acid:
IHKNLIKDFKYALVWGSSVK
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.9
32.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.4
0.68
0.8
77.2
30.8
Minor 5ss
40.2
-1.1
2.8
54.6
37.1
Minor BPS
76.7
0.82
1.5
85.84
32.3

Associated Gene:

Gene:
DRG1
Ensembl Gene ID:
ENSAPLG00000004250
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004370
6960451 - 6964848
4398