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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6961143_6961598_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6961143 - 6961598
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CCATGTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
TTGGCATTGACT
Flanking Amino Acid:
KIWDYLKLVRIYTKPKGQLP
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.9
37.3
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
74.8
0.56
0.9
65.1
41
Minor 5ss
32.5
-2
2.9
41.7
37.6
Minor BPS
62.5
0.47
1.8
80.28
41.8

Associated Gene:

Gene:
DRG1
Ensembl Gene ID:
ENSAPLG00000004250
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004370
6960451 - 6964848
4398