About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6962732_6963276_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6962732 - 6963276
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTT
Flanking Amino Acid:
GKGRGRQVIAVARTCNLILI
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.9
30.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79.8
0.67
0.8
77.7
35.7
Minor 5ss
33.9
-1.8
2.8
41.5
45.1
Minor BPS
64
0.52
1.7
84.31
36.7

Associated Gene:

Gene:
DRG1
Ensembl Gene ID:
ENSAPLG00000004250
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004370
6960451 - 6964848
4398