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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6963347_6963752_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6963347 - 6963752
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTGAACAAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TTTCTCTGAACA
Flanking Amino Acid:
VIRYKGAKIQLLDLPGIIEG
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
54.6
0.1
1
48.8
38.4
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
72.2
0.69
1.4
81.77
32.6

Associated Gene:

Gene:
DRG1
Ensembl Gene ID:
ENSAPLG00000004250
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004370
6960451 - 6964848
4398