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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6964646_6964806_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6964646 - 6964806
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGCGC
5'SS Class:
major
3'SS Sequence:
GTTGCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
CGGTGCTGAGGG
Flanking Amino Acid:
LAKIAEIEAEMARTQKNKAT
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.2
58.7
46.2
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
80.1
0.68
0.9
73.4
37
Minor 5ss
36.6
-1.5
3.3
51
45.6
Minor BPS
37
-1.1
2.2
36.44
45.2

Associated Gene:

Gene:
DRG1
Ensembl Gene ID:
ENSAPLG00000004250
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004370
6960451 - 6964848
4398