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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6975105_6977485_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6975105 - 6977485
Intron Length:
2381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TTTGTTTTAAGT
Flanking Amino Acid:
ICQSCGKGFSRPDHLNGHIK
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
79.6
0.67
1
83.9
30.7
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
65
0.55
1.7
82.56
39.6

Associated Gene:

Gene:
PATZ1
Ensembl Gene ID:
ENSAPLG00000003934
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004029
6973816 - 6990413
16598