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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6977550_6983965_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6977550 - 6983965
Intron Length:
6416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTACCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CTTGTTGTACCT
Flanking Amino Acid:
HTSERPHKCQTCNASFATRD
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
74.7
0.56
0.9
67.1
39.4
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
44.5
-0.3
2.3
65.89
45.8

Associated Gene:

Gene:
PATZ1
Ensembl Gene ID:
ENSAPLG00000003934
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004029
6973816 - 6990413
16598