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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6984138_6988518_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6984138 - 6988518
Intron Length:
4381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGAGG
5'SS Class:
major
3'SS Sequence:
TTATCTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTCCTTTTATC
Flanking Amino Acid:
PSNFCTICNRGFSSASYLKV
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
66.2
44.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
77.6
0.62
0.9
77.6
36.5
Minor 5ss
31.7
-2.1
3.1
40.2
45.5
Minor BPS
58.6
0.25
1.6
67.54
38.5

Associated Gene:

Gene:
PATZ1
Ensembl Gene ID:
ENSAPLG00000003934
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004029
6973816 - 6990413
16598