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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_6988657_6989994_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6988657 - 6989994
Intron Length:
1338

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AGGTTCTGAAAA
Flanking Amino Acid:
FHCVRTYGIKEGQKCSHSDP
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.9
79.6
35.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
83.5
0.75
0.6
80.2
25.3
Minor 5ss
20.4
-3.4
3.9
31.7
42.9
Minor BPS
53.3
0.1
1.5
60.69
38.7

Associated Gene:

Gene:
PATZ1
Ensembl Gene ID:
ENSAPLG00000003934
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004029
6973816 - 6990413
16598