Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7006397_7008402_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7006397 - 7008402

Intron Length:

2006

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCAGTGGC

5'SS Class:

major

3'SS Sequence:

TTTTCTTATCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTTTTCTTATCT

Flanking Amino Acid:

AGIVLGYIYKRGKDLKEKHE

Intron Amino Acid Position:

198

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

1.3

72.7

38.2

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

83.6

0.76

0.8

78.2

35.4

Minor 5ss

28.4

-2.5

35.8

40.9

Minor BPS

79.8

1.01

1.4

95.48

31.1

Associated Gene:

Gene:

PIK3IP1

Ensembl Gene ID:

ENSAPLG00000003911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004001

6999348 - 7008610

9263

ENSAPLT00000042415

7002614 - 7008610

5997