About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7012823_7013002_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7012823 - 7013002
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTGCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
ATTTCCTCACTG
Flanking Amino Acid:
AICCRLEPESRPPFSKLEDS
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
70.7
0.47
0.9
61.8
40
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
56.3
0.06
1.9
66
42.2

Associated Gene:

Gene:
LIMK2
Ensembl Gene ID:
ENSAPLG00000003115
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003238
7012666 - 7043225
30560