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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7016646_7017453_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7016646 - 7017453
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCTAT
5'SS Class:
major
3'SS Sequence:
ATCCCTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTAATCTAAATC
Flanking Amino Acid:
LNSHNCLIKLDKTVVVADFG
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
72.8
34.5
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
69.8
0.45
0.9
65.4
35.4
Minor 5ss
40.2
-1.1
3.1
52.2
46
Minor BPS
57.2
0.2
1.7
67.33
38.5

Associated Gene:

Gene:
LIMK2
Ensembl Gene ID:
ENSAPLG00000003115
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003238
7012666 - 7043225
30560