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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7019027_7021438_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7019027 - 7021438
Intron Length:
2412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTGCCTGTAGTT
Flanking Amino Acid:
GKGFFGQAIKVTHKATGKVM
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
73.7
0.53
0.9
67.1
39.2
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
46.9
-0.1
2.2
68.76
43

Associated Gene:

Gene:
LIMK2
Ensembl Gene ID:
ENSAPLG00000003115
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003238
7012666 - 7043225
30560