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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7023387_7023729_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7023387 - 7023729
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTCCCATGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
CCCACTATAATT
Flanking Amino Acid:
SSYATGVQVKEVNRMHISPD
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
71.6
40.2
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
71.2
0.48
0.9
69.8
35.6
Minor 5ss
35.2
-1.7
2.8
39
40.2
Minor BPS
48.8
-0
1.7
60.64
43.8

Associated Gene:

Gene:
LIMK2
Ensembl Gene ID:
ENSAPLG00000003115
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003238
7012666 - 7043225
30560