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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7023919_7024167_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7023919 - 7024167
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TCACTTCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ACTGCCATAACG
Flanking Amino Acid:
YALVQHSTLYCGKCHNQIVL
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
65.2
41.6
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
78.9
0.65
0.8
77.3
31.2
Minor 5ss
37.5
-1.4
3
44.3
45.4
Minor BPS
57
0.08
1.8
62.6
45.1

Associated Gene:

Gene:
LIMK2
Ensembl Gene ID:
ENSAPLG00000003115
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003238
7012666 - 7043225
30560