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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7025627_7040457_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7025627 - 7040457
Intron Length:
14831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
GTTTCCTTCAAG
Flanking Amino Acid:
VNEAWHISCFRCSECQDPLT
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.1
72.7
38.8
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
74.6
0.55
1
72.4
38.1
Minor 5ss
35.1
-1.7
3
45.5
42.9
Minor BPS
61
0.2
2
69.63
43.2

Associated Gene:

Gene:
LIMK2
Ensembl Gene ID:
ENSAPLG00000003115
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003238
7012666 - 7043225
30560