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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7040558_7043212_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7040558 - 7043212
Intron Length:
2655

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCCTGAGAA
5'SS Class:
major
3'SS Sequence:
TTTCTGCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
GTCACCTTATTT
Flanking Amino Acid:
LAGPSEEVWRCLGC
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.3
52.4
41.6
Major BPS
70
0.5
1
59.6
38.6
Major PPT
74.6
0.55
0.9
69.2
36.1
Minor 5ss
22.6
-3.2
3.9
29.3
37.3
Minor BPS
60.1
0.39
1.7
73.37
43.7

Associated Gene:

Gene:
LIMK2
Ensembl Gene ID:
ENSAPLG00000003115
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003238
7012666 - 7043225
30560