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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7049757_7051262_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7049757 - 7051262
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GGAATGCTCACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TCTCTGTGAACA
Flanking Amino Acid:
AVISLCGHLFCWPCLHQWLE
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
59
0.2
1.1
49.7
43.6
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
48.6
-0.1
2.1
65.1
41.3

Associated Gene:

Gene:
RNF185
Ensembl Gene ID:
ENSAPLG00000003040
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027002
7044893 - 7051444
6552