Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7059808_7061200_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7059808 - 7061200

Intron Length:

1393

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGCCCTGG

5'SS Class:

weak_major

3'SS Sequence:

AAACAGGCGTGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTATTTTAAAC

Flanking Amino Acid:

DASPSQPSLWVNGHDEDGNE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.2

38.7

43.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

39.4

-0.6

1.6

32.3

41.1

Minor 5ss

41.8

-0.9

3.1

46.9

48.5

Minor BPS

67.7

0.53

1.4

75.88

33.9

Associated Gene:

Gene:

C12orf43

Ensembl Gene ID:

ENSAPLG00000018598

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038825

7059721 - 7063140

3420