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Intron Name: Anas_platyrhynchos_platyrhynchos_16_7066113_7066716_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7066113 - 7066716

Intron Length:

604

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

GTGCTTTTAACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTTAA

U12 Branch Point Sequence:

TTGTACTTAACT

Flanking Amino Acid:

PGPRLTSSPAVSSSSLVLYQ

Intron Amino Acid Position:

593

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

68.7

34.5

Major BPS

74.4

0.61

0.9

63.9

34.9

Major PPT

73.7

0.53

69.2

40.7

Minor 5ss

31.8

-2.1

3.3

40.1

39.9

Minor BPS

81.3

1.06

1.4

93.21

34.9

Associated Gene:

Gene:

HNF1A

Ensembl Gene ID:

ENSAPLG00000002580

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002614

7065985 - 7080854

14870