About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7067284_7067519_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7067284 - 7067519
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGCG
5'SS Class:
major
3'SS Sequence:
CTTTCGTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAGAA
U12 Branch Point Sequence:
CTTTCGTGCACA
Flanking Amino Acid:
ATMAQIQNPHALYGPKSEVA
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
63.8
40.9
Major BPS
52.4
0.06
1.1
48.9
36.6
Major PPT
73
0.52
1
67.7
37.8
Minor 5ss
31.2
-2.1
3.3
40.7
45
Minor BPS
46.8
-0.2
2.5
67.78
44.7

Associated Gene:

Gene:
HNF1A
Ensembl Gene ID:
ENSAPLG00000002580
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002614
7065985 - 7080854
14870