About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7067712_7069033_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7067712 - 7069033
Intron Length:
1322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATCAC
U12 Branch Point Sequence:
ACTGACATCACT
Flanking Amino Acid:
TNTGASTLVIGLASTQPQSV
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
56.9
0.17
1.1
59.7
36.1
Major PPT
86.1
0.81
0.8
83.6
31.4
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
44.1
-0.3
2.2
64.03
45.9

Associated Gene:

Gene:
HNF1A
Ensembl Gene ID:
ENSAPLG00000002580
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002614
7065985 - 7080854
14870