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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7069236_7070987_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7069236 - 7070987
Intron Length:
1752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACAGTC
Flanking Amino Acid:
QNLLSTDTKLISASGGTLPP
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.9
0.54
0.8
68.7
30.7
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
47.8
-0.1
2
67.28
38.5

Associated Gene:

Gene:
HNF1A
Ensembl Gene ID:
ENSAPLG00000002580
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002614
7065985 - 7080854
14870