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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7072130_7072438_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7072130 - 7072438
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAGCAA
U12 Branch Point Sequence:
TTTCTCCTAACA
Flanking Amino Acid:
EREALVEECNRAECIQRGVS
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.8
39.1
Major BPS
46.6
-0.2
1.4
53.9
41.5
Major PPT
81.7
0.71
0.8
77.8
29.5
Minor 5ss
39.7
-1.2
3.4
55
49.2
Minor BPS
68.4
0.57
1.6
81.54
33

Associated Gene:

Gene:
HNF1A
Ensembl Gene ID:
ENSAPLG00000002580
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002614
7065985 - 7080854
14870