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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7072626_7073348_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7072626 - 7073348
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
CTTGTGCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
CTTCCCAAAAGC
Flanking Amino Acid:
YVRKQREVAQQFTHAGQGIL
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
72.7
44.5
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
76.7
0.6
0.9
69.7
36.7
Minor 5ss
40.3
-1.1
2.8
47
41.7
Minor BPS
45.4
-0.3
2.2
60.67
44.5

Associated Gene:

Gene:
HNF1A
Ensembl Gene ID:
ENSAPLG00000002580
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002614
7065985 - 7080854
14870