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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7121697_7128494_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7121697 - 7128494
Intron Length:
6798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAG
U12 Branch Point Sequence:
TGCCTATTAAGT
Flanking Amino Acid:
SILLIVYGSFRSLNMDFENQ
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
67.8
0.44
1.5
75.9
36.3
Major PPT
93.3
0.97
0.6
89.3
19.4
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
48.9
-0
1.9
66.88
43.6

Associated Gene:

Gene:
SPPL3
Ensembl Gene ID:
ENSAPLG00000001664
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001875
7117561 - 7145670
28110