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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7128584_7131548_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7128584 - 7131548
Intron Length:
2965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGGTT
5'SS Class:
major
3'SS Sequence:
CTTTCCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTTTCCTCCACA
Flanking Amino Acid:
GSFNGNSTNNSIQTIDSTQA
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
71
39.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
81.7
0.71
0.7
76.2
25.9
Minor 5ss
37.4
-1.4
3.8
61
44.7
Minor BPS
60.8
0.33
2
75.44
42.2

Associated Gene:

Gene:
SPPL3
Ensembl Gene ID:
ENSAPLG00000001664
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001875
7117561 - 7145670
28110