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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7131669_7134896_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7131669 - 7134896
Intron Length:
3228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTAAG
5'SS Class:
major
3'SS Sequence:
CTTCCTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTAATATTACCT
Flanking Amino Acid:
VQVVFTICTAVLATIAFAFL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
74
38.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.6
0.76
0.7
76.7
31.9
Minor 5ss
35.2
-1.7
2.7
41.5
45.1
Minor BPS
47.8
-0
1.9
66.22
44.1

Associated Gene:

Gene:
SPPL3
Ensembl Gene ID:
ENSAPLG00000001664
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001875
7117561 - 7145670
28110