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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7135834_7140989_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7135834 - 7140989
Intron Length:
5156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTGCATTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCTCTTTAATG
Flanking Amino Acid:
VLTGHWLLMDALAMGLCVAM
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
78.2
37.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
75.8
0.58
0.9
69.9
35.5
Minor 5ss
34.4
-1.8
2.8
43.3
43.8
Minor BPS
76.9
0.7
1.2
74.65
38.4

Associated Gene:

Gene:
SPPL3
Ensembl Gene ID:
ENSAPLG00000001664
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001875
7117561 - 7145670
28110