About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7143657_7144740_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7143657 - 7144740
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
FHCTLIGYFVGLLTATVASR
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
95.6
1.03
0.5
91.4
20.1
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
SPPL3
Ensembl Gene ID:
ENSAPLG00000001664
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001875
7117561 - 7145670
28110