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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7153708_7154080_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7153708 - 7154080
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTACA
5'SS Class:
strong_major
3'SS Sequence:
ACCTTCGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GCCTTTGTAACC
Flanking Amino Acid:
SEAATSIAHQAIQILGGMGY
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
80.7
33.8
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
76.4
0.59
0.9
72.8
36.8
Minor 5ss
41.6
-0.9
2.5
52.6
44
Minor BPS
48.7
-0.1
2
57.49
42.1

Associated Gene:

Gene:
ACADS
Ensembl Gene ID:
ENSAPLG00000016040
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016747
7153555 - 7157109
3555