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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7154138_7154346_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7154138 - 7154346
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGACA
5'SS Class:
major
3'SS Sequence:
TCCTTCCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
CCTTCCCCAAAG
Flanking Amino Acid:
LKDNGKPFTKEAAMAKLAAS
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.9
38
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
66.5
0.37
1
67
26.9
Minor 5ss
38.7
-1.3
3
49.8
46.1
Minor BPS
46.4
-0.4
2.1
53.67
46.6

Associated Gene:

Gene:
ACADS
Ensembl Gene ID:
ENSAPLG00000016040
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016747
7153555 - 7157109
3555