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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7154443_7154714_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7154443 - 7154714
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGCCAC
U12 Branch Point Sequence:
TCGGCCAAAGGC
Flanking Amino Acid:
SPITKLQAIQFKLADMAVAL
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
69.9
40.9
Major BPS
42.9
-0.4
1.2
45.5
37.5
Major PPT
82.8
0.74
0.9
77.1
37.1
Minor 5ss
37.9
-1.4
3.6
56.7
47.5
Minor BPS
35.9
-1
2.1
42.24
44.9

Associated Gene:

Gene:
ACADS
Ensembl Gene ID:
ENSAPLG00000016040
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016747
7153555 - 7157109
3555