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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7154853_7155352_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7154853 - 7155352
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTGCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CCTGATTTAATG
Flanking Amino Acid:
QLGMGFKIAMQTLDAGRIGI
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.6
38.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.2
0.61
0.9
76.7
37.4
Minor 5ss
32.3
-2
3.5
44.3
45.4
Minor BPS
49.2
-0.2
1.7
51.08
44.3

Associated Gene:

Gene:
ACADS
Ensembl Gene ID:
ENSAPLG00000016040
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016747
7153555 - 7157109
3555