About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7155524_7155796_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7155524 - 7155796
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GCTCCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
AAGTCATCACCA
Flanking Amino Acid:
ATTDKALKHKGISAFLVPMP
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
73.6
31.1
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
75.1
0.57
0.9
68.4
37.3
Minor 5ss
42.1
-0.9
2.6
53.2
44.1
Minor BPS
45.7
-0.3
2
56.75
42

Associated Gene:

Gene:
ACADS
Ensembl Gene ID:
ENSAPLG00000016040
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016747
7153555 - 7157109
3555