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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7155949_7156307_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7155949 - 7156307
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGTGA
5'SS Class:
major
3'SS Sequence:
CTGCCTTGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
ACCACCTGAATG
Flanking Amino Acid:
KIGCFALSEPGNGSDAGAAT
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
64.6
37.7
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
68.9
0.43
1
64.3
36.5
Minor 5ss
30.7
-2.2
3.2
38.6
46.4
Minor BPS
50.9
-0.1
1.6
51.23
43.3

Associated Gene:

Gene:
ACADS
Ensembl Gene ID:
ENSAPLG00000016040
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016747
7153555 - 7157109
3555