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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7156420_7156620_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7156420 - 7156620
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TCCGTTCTCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CAGGCACTAACT
Flanking Amino Acid:
STGVIVSVNNSLYLGPILKF
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
74.6
37.4
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
65.7
0.35
1
66.1
33.7
Minor 5ss
35.3
-1.7
3.2
44.3
36.5
Minor BPS
46.5
-0.1
2
62.99
46.5

Associated Gene:

Gene:
ACADS
Ensembl Gene ID:
ENSAPLG00000016040
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016747
7153555 - 7157109
3555