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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7180954_7181358_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7180954 - 7181358
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CATGTGCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTTTCATGT
Flanking Amino Acid:
VKELRDAFREFDTNGDGEIS
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
100
1.24
0.5
100
0
Major PPT
73.4
0.53
1
65.5
40.7
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
47
-0.1
2
68.49
42.8

Associated Gene:

Gene:
CABP1
Ensembl Gene ID:
ENSAPLG00000015765
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016449
7178035 - 7204082
26048