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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7181469_7182702_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7181469 - 7182702
Intron Length:
1234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
GTCTTATCCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTCGTCTTATCC
Flanking Amino Acid:
IELSQQINMNLGGHVDFEDF
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.3
68.8
38
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
63
0.29
1.1
60.6
39.7
Minor 5ss
32.4
-2
2.7
41.3
38.3
Minor BPS
59.2
0.27
1.7
69.18
42.9

Associated Gene:

Gene:
CABP1
Ensembl Gene ID:
ENSAPLG00000015765
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016449
7178035 - 7204082
26048