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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7183548_7203470_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7183548 - 7203470
Intron Length:
19923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
AAGGCTTTAACA
Flanking Amino Acid:
HPMLSSVFGQDRELRPEEIE
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
65.2
0.47
1.4
66.58
40.1

Associated Gene:

Gene:
CABP1
Ensembl Gene ID:
ENSAPLG00000015765
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016449
7178035 - 7204082
26048