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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7187117_7191740_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7187117 - 7191740
Intron Length:
4624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTTGGCTGGGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTGTT
U12 Branch Point Sequence:
TTGGCTGGGAAG
Flanking Amino Acid:
KSPLRNLSKKIRHEEKTCYK
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.6
31.5
Major BPS
32.2
-1.1
4.2
57.1
49.4
Major PPT
49
-0
1.3
48.6
44.1
Minor 5ss
47.6
-0.2
2.4
62.3
42.5
Minor BPS
37.9
-1.1
2.2
43.38
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025920
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037810
7182136 - 7191785
9650