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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7231426_7231495_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7231426 - 7231495
Intron Length:
70

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GCGGCCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTAAC
U12 Branch Point Sequence:
CCCCCGGTAACC
Flanking Amino Acid:
MVRFKNRYVLCQVVAE
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
48.8
-0
1.3
50.7
41.5
Major PPT
60
0.23
0.9
54.5
36.5
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
41.8
-0.6
2.5
50.92
46.3

Associated Gene:

Gene:
POP5
Ensembl Gene ID:
ENSAPLG00000015761
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031467
7231406 - 7233141
1736
ENSAPLT00000016423
7231406 - 7233141
1736