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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7231639_7232764_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7231639 - 7232764
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGCGGCC
5'SS Class:
major
3'SS Sequence:
GTGACTCCGATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TGTTACATATCA
Flanking Amino Acid:
GLACCSLAFTGTIRSCQKFL
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61
0.26
1.2
56.4
37
Major BPS
79.4
0.73
1
80.1
32
Major PPT
56.1
0.14
1
50.8
39.3
Minor 5ss
29.2
-2.4
3.7
41.3
45.5
Minor BPS
50.4
0.01
2.1
70.62
40.9

Associated Gene:

Gene:
POP5
Ensembl Gene ID:
ENSAPLG00000015761
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031467
7231406 - 7233141
1736