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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7235978_7236820_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7235978 - 7236820
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TAATTCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATCATTTTAATT
Flanking Amino Acid:
DKPSAAEHLSEEKGGKKRKK
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.4
0.64
0.9
72.7
37
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
64.8
0.54
1.2
74.03
37.5

Associated Gene:

Gene:
RNF10
Ensembl Gene ID:
ENSAPLG00000015268
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015941
7235901 - 7252950
17050