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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7237515_7238249_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7237515 - 7238249
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTTAATTAACT
Flanking Amino Acid:
PLGRSPVFQTESIPTPLSPA
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
89.1
0.88
0.6
85.8
21.3
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
67.8
0.64
1.8
86.42
39.1

Associated Gene:

Gene:
RNF10
Ensembl Gene ID:
ENSAPLG00000015268
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015941
7235901 - 7252950
17050