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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7238382_7238874_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7238382 - 7238874
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
AGCCTCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AGTGCTTTAATT
Flanking Amino Acid:
EIEENKKQGKYPEVHIALEN
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
83.8
34.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
71
0.47
0.9
62
39.3
Minor 5ss
42.6
-0.8
3.1
63.9
40.4
Minor BPS
69.7
0.7
1.3
78.72
38

Associated Gene:

Gene:
RNF10
Ensembl Gene ID:
ENSAPLG00000015268
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015941
7235901 - 7252950
17050